| Registro completo |
| Provedor de dados: |
Braz. J. Plant Physiol.
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| País: |
Brazil
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| Título: |
Brazilian coffee genome project: an EST-based genomic resource
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| Autores: |
Vieira,Luiz Gonzaga Esteves
Andrade,Alan Carvalho
Colombo,Carlos Augusto
Moraes,Ana Heloneida de Araújo
Metha,Ângela
Oliveira,Angélica Carvalho de
Labate,Carlos Alberto
Marino,Celso Luis
Monteiro-Vitorello,Claúdia de Barros
Monte,Damares de Castro
Giglioti,Éder
Kimura,Edna Teruko
Romano,Eduardo
Kuramae,Eiko Eurya
Lemos,Eliana Gertrudes Macedo
Almeida,Elionor Rita Pereira de
Jorge,Érika C.
Albuquerque,Érika V. S.
Silva,Felipe Rodrigues da
Vinecky,Felipe
Sawazaki,Haiko Enok
Dorry,Hamza Fahmi A.
Carrer,Helaine
Abreu,Ilka Nacif
Batista,João A. N.
Teixeira,João Batista
Kitajima,João Paulo
Xavier,Karem Guimarães
Lima,Liziane Maria de
Camargo,Luis Eduardo Aranha de
Pereira,Luiz Filipe Protasio
Coutinho,Luiz Lehmann
Lemos,Manoel Victor Franco
Romano,Marcelo Ribeiro
Machado,Marcos Antonio
Costa,Marcos Mota do Carmo
Sá,Maria Fátima Grossi de
Goldman,Maria Helena S.
Ferro,Maria Inês T.
Tinoco,Maria Laine Penha
Oliveira,Mariana C.
Van Sluys,Marie-Anne
Shimizu,Milton Massao
Maluf,Mirian Perez
Eira,Mirian Therezinha Souza da
Guerreiro Filho,Oliveiro
Arruda,Paulo
Mazzafera,Paulo
Mariani,Pilar Drummond Sampaio Correa
Oliveira,Regina L.B.C. de
Harakava,Ricardo
Balbao,Silvia Filippi
Tsai,Siu Mui
Mauro,Sonia Marli Zingaretti di
Santos,Suzana Neiva
Siqueira,Walter José
Costa,Gustavo Gilson Lacerda
Formighieri,Eduardo Fernandes
Carazzolle,Marcelo Falsarella
Pereira,Gonçalo Amarante Guimarães
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| Data: |
2006-03-01
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| Ano: |
2006
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| Palavras-chave: |
Coffea
CDNA
EST
Transcriptome
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| Resumo: |
Coffee is one of the most valuable agricultural commodities and ranks second on international trade exchanges. The genus Coffea belongs to the Rubiaceae family which includes other important plants. The genus contains about 100 species but commercial production is based only on two species, Coffea arabica and Coffea canephora that represent about 70 % and 30 % of the total coffee market, respectively. The Brazilian Coffee Genome Project was designed with the objective of making modern genomics resources available to the coffee scientific community, working on different aspects of the coffee production chain. We have single-pass sequenced a total of 214,964 randomly picked clones from 37 cDNA libraries of C. arabica, C. canephora and C. racemosa, representing specific stages of cells and plant development that after trimming resulted in 130,792, 12,381 and 10,566 sequences for each species, respectively. The ESTs clustered into 17,982 clusters and 32,155 singletons. Blast analysis of these sequences revealed that 22 % had no significant matches to sequences in the National Center for Biotechnology Information database (of known or unknown function). The generated coffee EST database resulted in the identification of close to 33,000 different unigenes. Annotated sequencing results have been stored in an online database at <A HREF="http://www.lge.ibi.unicamp.br/cafe">http://www.lge.ibi.unicamp.br/cafe</A>. Resources developed in this project provide genetic and genomic tools that may hold the key to the sustainability, competitiveness and future viability of the coffee industry in local and international markets.
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| Tipo: |
Info:eu-repo/semantics/article
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| Idioma: |
Inglês
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| Identificador: |
http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1677-04202006000100008
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| Editor: |
Brazilian Journal of Plant Physiology
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| Relação: |
10.1590/S1677-04202006000100008
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| Formato: |
text/html
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| Fonte: |
Brazilian Journal of Plant Physiology v.18 n.1 2006
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| Direitos: |
info:eu-repo/semantics/openAccess
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